PREPARED BY : IRSA IKHLAQ
SESSION : 2019-23
DEPARTMENT OF ZOOLOGY, GC SIALKOT
TOPIC :
MOLECULAR GENETICS MADE SIMPLE
•THE STRUCTURE OF DNA AND ITS PACKING
The First Piece of the Puzzle: Miescher Discovers DNA
DNA was first identified in the late 1860s by Swiss chemist Friedrich Miescher. Then,
in the decades following Miescher’s discovery, other scientist notably, Phoebus
Levene and Erwin Chargaff--carried out a series of research efforts that revealed
additional details about the DNA molecule.
Due to its occurrence in the cells’ nuclei, he termed the novel substance “nuclein”—a
term still preserved in today’s name deoxyribonucleic acid.
•LAYING THE GROUNDWORK
Levene Investigates the Structure of DNA
Levene proposed that nucleic acids were composed of a series of nucleotides, and that
each nucleotide was in turn composed of just one of four nitrogen-containing bases, a
sugar molecule, and a phosphate group.
Chargaff’s rule:
The amount of adenine (A) is usually similar to the amount of thymine (T), and the
amount of guanine (G) usually approximates the amount of cytosine (C). In other
words, the total amount of purines (A + G) and the total amount of pyrimidines (C +
T) are usually nearly equal.
•DISTINGUISHING POLYMORPHISM FROM
MUTATION IN GENES
DistinguishingPolymorphismfrommutationingenes:
Ageneissaidtobepolymorphicifmorethanonealleleoccupiesthatgene'slocuswithina
population.Inadditiontohavingmorethanonealleleataspecificlocus,eachallelemustalso
occurinthepopulationatarateofatleast1%togenerallybeconsideredpolymorphic.
Mutation”and“polymorphism”:earlierdefinition
TheuniformandunequivocaldescriptionofsequencevariantsinhumanDNAandprotein
sequences(mutations,polymorphisms)wereinitiatedbytwopaperspublishedin1993.Inthis
context,anyrarechangeinthenucleotidesequence,usuallybutnotalwayswithadisease
causingattribute,istermeda“mutation”.Thischangeinthenucleotidesequencemayormay
notcausephenotypicchanges.
•DIFFERENCE BETWEEN GENE
POLYMORPHISM AND MUTATIONS
Aruleofthumbthatissometimesusedistoclassifygeneticvariantsthatoccurbelow1%allele
frequencyasmutationsratherthanpolymorphisms.However,sincepolymorphismsmayoccuratlow
allelefrequency,thisisnotareliablewaytotellnewmutationsfrompolymorphisms.
Identification:
Polymorphismscanbeidentifiedinthelaboratoryusingavarietyofmethods.Manymethodsemploy
PCRtoamplifythesequenceofagene.Onceamplified,polymorphismsandmutationsinthesequence
canbedetectedbyDNAsequencing,eitherdirectlyorafterscreeningforvariationwithamethodsuch
assinglestrandconformationpolymorphismanalysis.
Geneswhichcontrolhaircolourarepolymorphic.
Genepolymorphismscanoccurinanyregionofthegenome.Themajorityofpolymorphismsaresilent,
meaningtheydonotalterthefunctionorexpressionofagene.Somepolymorphismsarevisible.For
example,indogstheElocuscanhaveanyoffivedifferentalleles,knownasE,Em,Eg,Eh,and
e.Varyingcombinationsoftheseallelescontributetothepigmentationandpatternsseenindogcoats.
•DISEASE DUE TO VARIANT OF A GENE
Apolymorphicvariantofagenecanleadtotheabnormalexpressionortothe
productionofanabnormalformoftheprotein;thisabnormalitymaycauseorbe
associatedwithdisease.
Forexample,apolymorphicvariantofthegeneencodingtheenzymeCYP4A11,in
whichthymidinereplacescytosineatthegene'snucleotide8590positionencodesa
CYP4A11proteinthatsubstitutesphenylalaninewithserineattheprotein'samino
acidposition434.Thisvariantproteinhasreducedenzymeactivityinmetabolizing
arachidonicacidtothebloodpressure-regulatingeicosanoid,20-
hydroxyeicosatetraenoicacid.Astudyhasshownthathumansbearingthisvariantin
oneorbothoftheirCYP4A11geneshaveanincreasedincidenceofhypertension,
ischemicstroke,andcoronaryarterydisease.
DISEASE DUE TO MUTATION OF GENE
•MODE OF INHERITANCE —CLINICAL AND GENETIC
HETEROGENEITY
Onceamutationhasbeendirectlyassociatedwithapathologicalphenotypeanumberof
additionalparametersneedtobeevaluatedinordertomaximizeitsvalueintheclinical
setting.
.Thecategorizationgonosomalorautosomaldependsonwhetherthemutationsare
locatedoneitherofthesexchromosomesornot.Forexample,amutationontheY
chromosomewillonlyaffectmales.
Inhypertrophiccardiomyopathy(HCM)anumberofcaseshavebeenreportedwith
homozygosityforthepathogenicmutation.
Forexample,inEgyptianHCMcohort,noneofthemutation-positivepatientswere
homozygousforthemutationdetected(datanotpublished)whichmightbeexplained
eitherbytherarityofitsoccurrenceinthespecificcohortorduetotechnicallimitations
inthemutationscreeningmethod.
•REFERENCES
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