UCSF Chimera | BioCode Ltd

UCSF Chimera

1. UCSF Chimera

2. Content Introduction Objectives Input & Output Methodology Results Analysis Conclusion

3. UCSF Chimera is a stand-alone computational tool for visualization and analysis of 3D protein structure available for download on any operating system including Mac OS, Windows and Ubuntu. Introduction

4. “ UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization developed by the Resource for Biocomputing, Visualization and Informatics (RBVI).”

5. Objectives Available on Chimera is a standalone program and can be installed on windows, Linux & MacOS. Research Outcome Chimera can be used to generate high quality figures and animations out of the query protein model. Analyzes Chimera analyze the molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments.

6. Input The tool requires to open the file containing the query protein in PDB format. Chimera results in visualizing the 3D protein structure, high quality figure and sequence alignment. Output Input & Output

7. 3D structure of Crystal structure of the SARS coronavirus nucleocapsid protein dimerization domain created using the UCSF Chimera.

8. Structure Tools Provides many sequence alignment formats read. Docking Analysis of the docking results, trajectories and conformational ensembles. Structure Analysis Automatic identification of atom and structure building Visualization Generate high quality figures and animations Volume Data provides many formats of volume data maps Methodology Images & Movies Provides the high-resolution images visual effects

9. UCSF Chimera is a program for the interactive visualization and analysis of molecular structures. High-quality images and animations can be generated. Chimera includes complete documentation and is free of charge for academic, government, nonprofit, and personal use. Conclusion

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