Introduction
Enzymesarebiologicalcatalyststhatspeed
up the rate of the biochemicalreaction.
Mostenzymes are three dimensionalglobular
proteins(tertiary and quaternarystructure).
Enzymesarebiologicalcatalyststhatspeed
up the rate of the biochemicalreaction.
Mostenzymes are three dimensionalglobular
proteins(tertiary and quaternarystructure).
SomespecialRNAspecies
enzymesandarecalledRibozymes
alsoactas
e.g.
hammerheadribozyme.
Hammerheadenzyme
ACTIVESITE
oActive sitecan be further dividedinto:
ActiveSite
Itchoosesthesubstrate
and bindsit toactivesite.
Itperformsthecatalytic
action ofenzyme.
BindingSite CatalyticSite
CO-FACTORS
oCo-factoristhenonproteinmoleculewhichcarriesout
chemicalreactionsthatcannotbeperformedbystandard20
aminoacids.
oCo-factors are of twotypes:
Organicco-factors
Inorganiccofactors
oCo-factoristhenonproteinmoleculewhichcarriesout
chemicalreactionsthatcannotbeperformedbystandard20
aminoacids.
oCo-factors are of twotypes:
Organicco-factors
Inorganiccofactors
INORGANICCO-FACTORS
oThese are the inorganic molecules required for theproper
activity ofenzymes.
Examples:
Enzyme carbonicanhydraserequiresZnforit’sactivity.
Hexokinase has co-factorMg
ORGANICCO-FACTORS
oThesearetheorganicmoleculesrequiredfortheproper
activityofenzymes.
Example:
Glycogenphosphorylaserequiresthesmallorganic
molecule pyridoxalphosphate.
++
++
ORGANICCO-FACTORS
oThesearetheorganicmoleculesrequiredfortheproper
activityofenzymes.
Example:
Glycogenphosphorylaserequiresthesmallorganic
molecule pyridoxalphosphate.
SITES OF ENZYMESYNTHESIS
oEnzymesaresynthesized byribosomeswhich are attachedto
the rough endoplasmicreticulum.
oInformation for the synthesis of enzymeiscarried byDNA.
oAminoacidsarebondedtogethertoformspecificenzyme
accordingtotheDNA’scodes.
oEnzymesaresynthesized byribosomeswhich are attachedto
the rough endoplasmicreticulum.
oInformation for the synthesis of enzymeiscarried byDNA.
oAminoacidsarebondedtogethertoformspecificenzyme
accordingtotheDNA’scodes.
INTRACELLULAR AND
EXTRACELLULAR ENZYMES
oIntracellularenzymes aresynthesizedandretainedinthecell
for the use of cellitself.
oTheyare found in the cytoplasm, nucleus,mitochondria and
chloroplast.
Example:
Oxydoreductase catalyses biologicaloxidation.
Enzymes involvedinreductioninthemitochondria.
oIntracellularenzymes aresynthesizedandretainedinthecell
for the use of cellitself.
oTheyare found in the cytoplasm, nucleus,mitochondria and
chloroplast.
Example:
Oxydoreductase catalyses biologicaloxidation.
Enzymes involvedinreductioninthemitochondria.
inthecellbutoExtracellularenzymesaresynthesized
secreted from the celltoworkexternally.
Example:
Digestiveenzymeproducedbythepancreas,arenotusedby
thecellsinthepancreasbutaretransportedtothe
duodenum.
CHARACTERISTICS
Enzymesspeedupthereactionbyloweringtheactivation
energy of thereaction.
Theirpresencedoesnoteffectthenature andpropertiesof
endproduct.
Theyarehighlyspecificintheiractionthatiseachenzyme
can catalyze one kind ofsubstrate.
Small amount of enzymes can accelerate chemicalreactions.
EnzymesaresensitivetochangeinpH,temperatureand
substrateconcentration.
Turnovernumberisdefinedasthenumberofsubstrate
moleculestransformedperminutebyoneenzymemolecule.
Catalaseturnovernumber = 6x106/min
Enzymesspeedupthereactionbyloweringtheactivation
energy of thereaction.
Theirpresencedoesnoteffectthenature andpropertiesof
endproduct.
Theyarehighlyspecificintheiractionthatiseachenzyme
can catalyze one kind ofsubstrate.
Small amount of enzymes can accelerate chemicalreactions.
EnzymesaresensitivetochangeinpH,temperatureand
substrateconcentration.
Turnovernumberisdefinedasthenumberofsubstrate
moleculestransformedperminutebyoneenzymemolecule.
Catalaseturnovernumber = 6x106/min
ENZYMESLOWER THEACTIVATIONENERGYOFA
REACTION
Initial energystate
ofsubstrates
Activationenergy
ofuncatalysed
reactionsActivationenergy
of enzymecatalysed
reaction
Energy levels
of
molecules
Final energystateof
products
of enzymecatalysed
reaction
Progress of reaction(time)
Energy levels
of
molecules
KINETICSOF ENZYMES CATALYSIS
Enzymescatalysis:
“ Itis anincreasein therateofreactionwith the helpof
enzyme(ascatalyst).”
Catalysisbyenzymesthatproceed
mechanism,typicallyoccurswhen
viauniquereaction
thetransitionstate
Catalysisbyenzymesthatproceed
mechanism,typicallyoccurswhen
viauniquereaction
thetransitionstate
intermediateformsa covalentbondwith theenzyme(covalent
catalysis).
Duringtheprocessofcatalysisenzymesalwaysemerge
unchanged at the completion of thereaction.
Rate
of
Reaction
Temperature
40
o
C-denatures
5-40
o
C
Increase inActivity
Rate
of
Reaction
0102030405060
<5
o
C-inactive
EFFECT OFPH
Rate of almost all enzymescatalyzed reactionsdependson
pH
Mostenzymesexhibit optimal activity at pH value between5
and9
High or lowpHvalue than optimum value will causeionization
of enzyme which resultindenaturation ofenzyme
Rate of almost all enzymescatalyzed reactionsdependson
pH
Mostenzymesexhibit optimal activity at pH value between5
and9
High or lowpHvalue than optimum value will causeionization
of enzyme which resultindenaturation ofenzyme
PHAFFECTS THEFORMATIONOF HYDROGEN BONDS
ANDSULPHUR BRIDGES IN PROTEINS ANDSO AFFECTS
SHAPE.
pepsin
trypsin arginase
Rate
of
Reaction
(M)
2 4 8 106
pH
Rate
of
Reaction
(M)
Acidic
Basic
MICHAELIS-MENTENMODEL&EFFECTSOF
SUBSTRATECONCENTRATION
Michaelis-MentenModel:
“According to this model theenzymereversibly combineswith
substrate to form an ES complex that subsequentlyyields
product, regeneratingthe freeenzyme.”
E+S ES E+P
k₁
k₋
₁
k
₂
where:
S is thesubstrate
E is theenzyme
ES-isthe enzyme substratecomplex
P is theproduct
K1,K-1and K2 are rateconstants
E+S ES E+P
k₁
k₋
₁
k
₂
MICHAELIS-MENTENEQUATION
Michaelis-MentenEquation:
“Itis an equation whichdescribeshowreaction velocityvaries
withsubstrateconcentration.”
V
max[S]
V
o=
K
m+[S]
Where
V
ois the initial reactionvelocity.
V
maxis the maximumvelocity.
K
mis the Michaelis constant =(k₋₁+k₂)/k₁.
[S]is the substrateconcentration.
Michaelis-MentenEquation:
“Itis an equation whichdescribeshowreaction velocityvaries
withsubstrateconcentration.”
V
max[S]
V
o=
K
m+[S]
Where
V
ois the initial reactionvelocity.
V
maxis the maximumvelocity.
K
mis the Michaelis constant =(k₋₁+k₂)/k₁.
[S]is the substrateconcentration.
ASSUMPTIONS FORMICHAELIS-MENTEN
EQUATION
Following assumptions are made in derivingtheMichaelis-
Mentenequation:
Relativeconcentrations of E andS.
Steady-Stateassumptions
InitialVelocity
SUBSTRATECONCENTRATION
SUBSTRATECONCENTRATION
PHARMACEUTICAL IMPORTANCE
Enzymesarevirtuallyinvolvedinallphysiologicalprocesses
whichmakesthemthetargetsofchoicefordrugsthatcureor
amelioratehumandisease.
Appliedenzymekineticsrepresentstheprincipaltoolbywhich
scientistidentifyandcharacterizetherapeuticagentsthat
selectivelyinhibittheratesofspecificenzymescatalyzed
processes.
Enzymeskineticsthusplayacriticalroleindrugdiscoveryas
well as elaborating the mode of action ofdrugs.
Enzymesarevirtuallyinvolvedinallphysiologicalprocesses
whichmakesthemthetargetsofchoicefordrugsthatcureor
amelioratehumandisease.
Appliedenzymekineticsrepresentstheprincipaltoolbywhich
scientistidentifyandcharacterizetherapeuticagentsthat
selectivelyinhibittheratesofspecificenzymescatalyzed
processes.
Enzymeskineticsthusplayacriticalroleindrugdiscoveryas
well as elaborating the mode of action ofdrugs.
FACTORSAFFECTINGENZYMEACTIVITY
TEMPERATURE ANDENZYMEACTION
Enzymes
•aremostactiveatan
optimumtemperature
(usually 37°C in
humans).
•show little activityat
lowtemperatures.
•loseactivity athigh
temperaturesas
denaturation occurs
Enzymes
•aremostactiveatan
optimumtemperature
(usually 37°C in
humans).
•show little activityat
lowtemperatures.
•loseactivity athigh
temperaturesas
denaturation occurs
PHANDENZYMEACTION
Enzymes
•aremostactiveat
optimum pH.
•contain R groupsof
amino acids with
proper chargesat
optimum pH.
•loseactivityin low or
high pH astertiary
structure isdisrupted.
Enzymes
•aremostactiveat
optimum pH.
•contain R groupsof
amino acids with
proper chargesat
optimum pH.
•loseactivityin low or
high pH astertiary
structure isdisrupted.
REVERSIBLEINHIBITION
oIt is an inhibition of enzyme activity in which theinhibiting
molecular entity can associate and dissociate from the
protein‘s bindingsite.
TYPESOFREVERSIBLEINHIBITION
oTherearefourtypes:
Competitiveinhibition.
Uncompetitiveinhibition.
Mixedinhibition.
Non-competitiveinhibition.
oIt is an inhibition of enzyme activity in which theinhibiting
molecular entity can associate and dissociate from the
protein‘s bindingsite.
TYPESOFREVERSIBLEINHIBITION
oTherearefourtypes:
Competitiveinhibition.
Uncompetitiveinhibition.
Mixedinhibition.
Non-competitiveinhibition.
EXAMPLES OF UNCOMPETITIVE
INHIBITION
Drugstotreatcasesofpoisoningbymethanolorethylene
glycol act as uncompetitiveinhibitors.
Tetramethylenesulfoxideand3-butylthiolene1-oxideare
uncompetitive inhibitors ofliveralcohaldehydrogenase.
Drugstotreatcasesofpoisoningbymethanolorethylene
glycol act as uncompetitiveinhibitors.
Tetramethylenesulfoxideand3-butylthiolene1-oxideare
uncompetitive inhibitors ofliveralcohaldehydrogenase.
MIXEDINHIBITION
oInthistypeofinhibitionbothE.IandE.S.Icomplexesare
formed.
oBoth complexes are catalyticallyinactive.
NONCOMPETITIVE INHIBITION
oIt isa special case ofinhibition.
oInthis inhibitorhas thesameaffinityforeither enzymeEor
theE.Scomplex.
oInthistypeofinhibitionbothE.IandE.S.Icomplexesare
formed.
oBoth complexes are catalyticallyinactive.
NONCOMPETITIVE INHIBITION
oIt isa special case ofinhibition.
oInthis inhibitorhas thesameaffinityforeither enzymeEor
theE.Scomplex.
IRREVERSIBLEINHIBITION
Thistypeof inhibition involvesthecovalentattachmentof theinhibitor
totheenzyme.
Thecatalytic activityof enzymeiscompletelylost.
Itcan only be restored only by synthesizingmolecules.