Karyotyping

slides prepared for students benefit

1. CHROMOSOME BANDING
TECHNIQUE
DR.G.KALAISELVI
ASSISTANT PROFESSOR, TANUVAS
INDIA

2. Point to be studied
Chromosomes
A. Definition
B. Structure
C. Identification
Karyotypes
A. Definition
B. Methods
C. Staining
D. Importance

3. Chromosome
Definition
Genetic structures of cells
containing DNA
Identification
Each chromosome has a
characteristic length and banding
pattern

4. Each autosome is numbered from 1-
22, sex chromosomes either X or Y

5. Samples for karyotyping
Amniocentesis – sample taken from
the fluid of the amniotic sac
Chorionic Villus Sampling – sample
taken from the fetal tissue that forms
part of the placenta

6. CYTOGENETICSCYTOGENETICS

Is the study of the structure and properties of Is the study of the structure and properties of
chromosomes, chromosomal behaviour during chromosomes, chromosomal behaviour during
mitosis and meiosis, chromosomal influence on mitosis and meiosis, chromosomal influence on
the phenotype and the factors that cause the phenotype and the factors that cause
chromosomal changes (Hare and Singh, 1979). chromosomal changes (Hare and Singh, 1979).

7. Nomenclature of Nomenclature of
chromosomeschromosomes

8. CHROMOSOMES ANALYSISCHROMOSOMES ANALYSIS

9. METHODOLOGYMETHODOLOGY

Aseptic precautionsAseptic precautions

Preparation of RPMI 1640 mediumPreparation of RPMI 1640 medium

Collection of 10ml of blood with Collection of 10ml of blood with
heparinheparin

Setting of cultureSetting of culture
8 ml of medium8 ml of medium
0.1 ml of PHA-M0.1 ml of PHA-M
0.5 ml of blood/plasma0.5 ml of blood/plasma
2 ml of autologus plasma/FCS2 ml of autologus plasma/FCS

Incubate at 37Incubate at 37°°C for 72 hoursC for 72 hours

10. METHODOLOGY…METHODOLOGY…
Harvesting of cultureHarvesting of culture

Spindle inhibitors – Colchicine/colcemed Spindle inhibitors – Colchicine/colcemed
(0.1(0.1mmg/ml)g/ml)

Hypotonic treatment – 0.075M KClHypotonic treatment – 0.075M KCl

Fixation (3:1 methanol : acetic acid)Fixation (3:1 methanol : acetic acid)

Preparation of slidesPreparation of slides

Slides stained with 4% Giemsa for 20-Slides stained with 4% Giemsa for 20-
25min25min

Screening of slides to study the morphology of Screening of slides to study the morphology of
chromosomechromosome

Construction of karyotypeConstruction of karyotype

11. MITOTIC CHROMOSOMAL MITOTIC CHROMOSOMAL
SPREAD OF CATTLESPREAD OF CATTLE

12. MITOTIC CHROMOSOMAL SPREAD OF MITOTIC CHROMOSOMAL SPREAD OF
CATTLECATTLE

14. NORMAL
KARYOTYPE
OF CATTLE

15. TERMS AND DEFINITIONS OF VARIOUS TERMS AND DEFINITIONS OF VARIOUS
ABERRATIONS OF CHROMOSOMESABERRATIONS OF CHROMOSOMES

Ring( r)Ring( r) Minute (min)Minute (min)

Dicentric (d) Dicentric (d) Hyperdiploid (h)Hyperdiploid (h)

Chromosome gap (sg)Chromosome gap (sg) Chromatid deletion (td)Chromatid deletion (td)

Fragment (f)Fragment (f) Acentric fragment (af)Acentric fragment (af)

Translocation (t)Translocation (t) Triradial (tr)Triradial (tr)

Quadriradial (qr)Quadriradial (qr) Pulverized chromosome Pulverized chromosome
(pu)(pu)

Pulverized chromosome (pu+)Pulverized chromosome (pu+)

Pulverized cell (puc)Pulverized cell (puc)

Complex rearrangement (cr)Complex rearrangement (cr)

Polyploid (pp) or endoreduplicationPolyploid (pp) or endoreduplication

16. BANDING OF BANDING OF
CHROMOSOMESCHROMOSOMES

G - BandingG - Banding

Q - BandingQ - Banding

C - BandingC - Banding

R - BandingR - Banding

T - BandingT - Banding

NOR - BandingNOR - Banding

High Resolution BandingHigh Resolution Banding

Restriction Endonuclease Restriction Endonuclease
BandingBanding

17. Q-bandingQ-banding
1.1.Dehydrate the slides by dipping in alcohol with Dehydrate the slides by dipping in alcohol with
decreasing concentration 90%, 70% and 50% decreasing concentration 90%, 70% and 50%
one min each.one min each.
2.2.Rinse in distilled water. Rinse in distilled water.
3.3.Wash the slide in phosphate buffer at pH 6.8.Wash the slide in phosphate buffer at pH 6.8.
4.4.Stain the slide in quinacrine mustard (5 mg in Stain the slide in quinacrine mustard (5 mg in
100mI) or in quinacrine dihydrochloride 5% for 100mI) or in quinacrine dihydrochloride 5% for
20 min.20 min.
5.5.Rinse in phosphate buffer and mount in the Rinse in phosphate buffer and mount in the
same buffer.same buffer.
6.6.Examine under fluorescent microscope.Examine under fluorescent microscope.

18. C-bandingC-banding

Treat the slides in 0.2 N HCI for one hr at Treat the slides in 0.2 N HCI for one hr at
room temperature.room temperature.

Rinse in de-ionized water.Rinse in de-ionized water.

Immerse in 1% barium hydroxide at 50°C for Immerse in 1% barium hydroxide at 50°C for
5-15 min.5-15 min.

Rinse in deionized water.Rinse in deionized water.

Incubate at 60°C in 2XSSC buffer for one Incubate at 60°C in 2XSSC buffer for one
hr.hr.

Rinse in de-ionized water and stain in 4% Rinse in de-ionized water and stain in 4%
Giemsa stain for 90 min.Giemsa stain for 90 min.

Rinse in de-ionized water, dry and examine Rinse in de-ionized water, dry and examine
under oil immersion.under oil immersion.

19. R-bandingR-banding

Age the slides for 7 -10 days .Age the slides for 7 -10 days .

Place the slides in a Coplinjar containing Place the slides in a Coplinjar containing
phosphate buffer ofpH 6.5 at 85°C and phosphate buffer ofpH 6.5 at 85°C and
incubate for 20-25 min.incubate for 20-25 min.

Stain the slides in 0.01% acridine orange Stain the slides in 0.01% acridine orange
in the phosphate buffer pH 6.5 for 4-6 min. in the phosphate buffer pH 6.5 for 4-6 min.
Rinse in phosphate buffer and mount in Rinse in phosphate buffer and mount in
the same buffer.the same buffer.

Examine under fluorescent microscope.Examine under fluorescent microscope.

20. T -bandingT -banding

Age the slide for 7 days.Age the slide for 7 days.

Place the slides in PBS pH 5.0 for 20-60 min at 87°C.Place the slides in PBS pH 5.0 for 20-60 min at 87°C.

Rinse in PBS.Rinse in PBS.

Stain in 3% Giemsa in phosphate buffer pH 6.8 at Stain in 3% Giemsa in phosphate buffer pH 6.8 at
87°C, leave for 5-30 min and rinse.87°C, leave for 5-30 min and rinse.

Slides are stained in Hoechst 33258 stain for 10 min Slides are stained in Hoechst 33258 stain for 10 min
(Hoechst stain 0.5 pg/m1 of phosphate buffer).Rinse in (Hoechst stain 0.5 pg/m1 of phosphate buffer).Rinse in
phosphate buffer and examine in fluorescent phosphate buffer and examine in fluorescent
microscope.microscope.

Alternatively, the stained slides are covered with a Alternatively, the stained slides are covered with a
cover slip and placed in a wet chamber under UV lamp cover slip and placed in a wet chamber under UV lamp
for 2 to 3 hrs or under direct sunlight for 2 hrs.for 2 to 3 hrs or under direct sunlight for 2 hrs.

Remove the cover slip and stain in Giemsa stain for Remove the cover slip and stain in Giemsa stain for
10 min.10 min.

Rinse in buffer, dry and mount in DPX.Rinse in buffer, dry and mount in DPX.

21. METHODOLOGYMETHODOLOGY
G- Banding techniqueG- Banding technique

Ageing of good slides for 10 daysAgeing of good slides for 10 days

Treated with trypsin 0.25% solution 10-15 secTreated with trypsin 0.25% solution 10-15 sec

Immersed in 70% ethanol for few minutes.Immersed in 70% ethanol for few minutes.

Stained with 10% Giemsa for 6-10min.Stained with 10% Giemsa for 6-10min.

Microphotograph good spreadsMicrophotograph good spreads

Construction of G-banded karyotypeConstruction of G-banded karyotype

22. G-BANDED MITOTIC CHROMOSOMAL G-BANDED MITOTIC CHROMOSOMAL
SPREAD OF CATTLESPREAD OF CATTLE

23. G-BANDED KARYOTYPE OF CATTLE

24. THANK YOU