molecular basis of inheritance - supernotes.pdf

GeetanjaliSaraswat1 892 views 104 slides Mar 15, 2024
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About This Presentation

Law of inheritance


Slide Content

Molecular Basis of Inheritance
1. The DNA
2. The Search for Genetic Material
3. RNA World
4. Replication
5. Transcription
6. Genetic Code
7. Translation
8. Regulation of Gene Expression
9. Human Genome project
10. DNA Fingerprinting

2 nucleic acids
Deoxyribonucleic
acid (DNA)
most organisms.
messenger(mostly)
adapter
structural
catalytic molecule
living systems
Ribonucleic acid
(RNA)
Genetic material
!

some viruses
!

Genetic material
Other
functions also÷
:
-

The DNA
long polymer of deoxyribonucleotides
bacteriophage ×174 5386 nucleotides
Bacteriophage lambda 48502 (bp)
Escherichia coli 4.6 x 10 bp
human DNA 3.3 x 10 bp (haploid)
human DNA
no. of nucleotides
Depends
6.6 x 10 bp (diploid)
v
a
=
,
::

Structure of Polynucleotide Chain
Purines (Ade!ne, Gua!ne)
Pyri"dines (Cytosine, Thy"ne,
Uracil,)
De#yribose
DNARNA
Ribose
RNA
DNA
RNA structure DNA structure
Nucleo$de
>
^

sooooo
-3gal

OH of 1'C
N-glycosidic linkage
Eg.
adenosine deoxyadenosine,
guanosine deoxyguanosine,
cytidine. deoxycytidine
uridine. deoxythymidine
OH of 5'C
phosphoester linkage
Nucleo$deNucleoside
RNADNA
÷


,

Dinucleo$de
2 nucleotides linked
3'-5' phosphodiester linkage
gggggqg

"

More nucleotides
polynucleotide chain
polynucleotide chain formation
free phosphate moiety at 5'-end of sugar
free sugar OH of 3'C group
sugar + phosphates = backbone
nitrogenous bases
linked

.:

In RNA
every nucleotide (additional -OH group) at 2'-position
uracil in place of thymine
(5-methyl uracil, another
chemical name for thymine).
DNARNA

Friedrich Meischer (1869)
DNA
acidic
Nucleus
'Nuclein'
Can’t isolate
DNA structure
unknown
James Watson & Francis Crick (1953)
X-ray diffraction data
Maurice Wilkins &
Rosalind Franklin
DNA structure
D%ble Hel& model
Based on
by
proposed
Hallmark
base pairing proposition b/w 2 strands of polynucleotide



I

Erwin Chargaff
Adenine & Thymine Guanine & Cytosine
b/w
Ratios ( constant & equals)
base pairing sequence
base pairing sequence
1 strand
2nd strand
Known Predictable
complementary
Bcz
genetic implication became revolutionary
DNA bases proposition
No. Of purines = no. Of pyrimidine
V
v
↓ ↓ ↓
↓ ↓

b

Parental DNA
"

As (template)
Daughter DNA
"

identical (parental DNA)
"
synthesis
v

Figure 6.2 Double stranded polynucleotide chain
A=T
G C
T=A
C G

1) 2 polynucleotide chains,( sugar,phosphate, bases)
2) anti-parallel polarity .one 5'->3', other 3'->5'.
3) hydrogen bond b/w bases
4) Two chains coiled right handed
pitch of helix (3.4 nm)
each turn (10 bp)
distance b/w bp (0.34 nm)
5) Stability of helical
H-bonds
one base pair
stacks over other
DNA salient features
.

Figure 6.3 DNA double helix

Francis Crick
Central dogma
proposed
(genetic information flows)
some viruses
reverse transcription (RNA to DNA)
:

length of DNA 1.36 mm,
No.of bp 4.6 x 10
E. coli
Packaging of DNA prokaryotes
No defined nucleus
DNA
"
not scattered
DNA
"
[-]with some proteins (+) as 'nucleoid'
DNA
"
in nucleoid
large loops
by proteins
nucleoid
>
,
-6
Haqq
Mariana
Mok
Mama

packaging of DNA Eukaryotes
nucleus (10 m)
6.6 x 10 bp × 0.34 × 10 m/bp
total no. of bp
distance b/w 2 bp
DNA
"
2.2 metres
2oo bp DNA
"
[-] with histones octamer (+)
nucleosome
r
v
÷

basic proteins histones [+]
rich in basic amino acid residues
Figure 6.4b EM picture - 'Beads-on-String
lysine & arginine
✓a

Repeated nucleosomes in
chromatin
chromatin, thread- like stained
Mmmmm
BppE•

(metaphase stage)
chromosomes
Euchr!a"nHeterochr!a"n
loosely packed densely packed
transcriptionally
active
transcriptionally
inactive
chromatin packaging at higher level
(NHC) proteins
requires
oak

اﻟﺷﺧص اﻟﻣﺣﺑوب
The Search for Genetic Material
Meischer Mendel
discovery of
nuclein
principles of
inheritance
same !me
DNA
"
(genetic material) took long discovered & proven
By 1926 genetic inheritance reached molecular level
narrowed search
#

chromosomes in
nucleus
Gregor Mendel,
Walter Sutton,
Thomas Hunt Morgan
& other scientists
Previous discoveries
:

Transforming Principle
Frederick Gri!ith, 1928Streptococcus pneumonia

Oswald Avery, MacCleod, & McCarty
decided to find out
transforming principle
(something in S cells)
Can trans"rm
R cells into S cells
but WHAT IS IT?
(1933-44)
Thought
$
protein (genetic material)
proteins, DNA, RNA, from heat-killed S cells
transform live R cells into S cells.
To see
°

They concluded DNA is hereditary material, but not all biologists
%&
convinced.

The Genetic Material is DNA
Alfred Hershey & Martha Chase (1952)
Bacteriophages
whether it protein or DNA from viruses
!
entered bacteria ???………….
Experiment 1: Testing Proteins
Phage grown with
radioactive sulfur
Centrifuge
Radioactivity in
supernatant
No radioactivity
enters cells
Protein coats
radio labeled
C#clusi#: Proteins are not gene!c material
E.coli Bacteria
infected

Experiment 2: Testing DNA
Phage grown with
radioactive
phosphorus
CentrifugeRadioactivity in
Pellet
radioactivity
enters cells
Phage DNA
radio labeled
E.coli Bacteria
infected
C#clusi#: DNA
!
gene!c material
Finally Debate ended
proteins
"
DNA
Hershey-Chase experiment
'

:

Figure 6.5 The Hershey-Chase experiment

Properties of Genetic Material (DNA
"
RNA)
RNA genetic material
(Eg, Tobacco Mosaic viruses, QB bacteriophage, etc.)
Also
As messenger & adapter etc
DNA predominant genetic material
DNA more stable storage of
RNA better transmission of
Genetic information
j

RNA DNA
Genetic material
must fulfill
Replication
Yes
Yes
stable chemically &
structurally
structurally more stable
chemically less reactive
chemically More reactive
structurally less stable
2'-OH
thymine more stability
uracil less stability
slow mutation for
evolution
faster rateSlower rate
express in form of
'Mendelian Characters'
DNA RNA proteins
RNA proteins
easily expressDepend on RNA
>

RNA World
RNA first genetic material
Evolved around RNA
metabolism, translation, splicing, etc.
RNA as catalyst
E$en!al Life proce$es
DNA
"
evolved from RNA
chemical modifications (more stable)
double stranded (resists changes)
evolving process of repair
with
A-

Replication
Watson & Crick
double helical structure for DNA
immediately

DNA
"
replication
Figure 6.6 Watson-Crick model for semiconservative DNA replication
2 strands
separate
template
one parental &
2nd newly synthesised strand.
"It has not escaped our notice that the
specific pairing we have postulated
immediately suggests a possible copying
mechanism for the geneticmaterial"
(Watson and Crick, 1953).
Orginal Quote

The Experimental Proof
Matthew Meselson & Franklin Stahl (1958)
not radioac!ve isotope
Escherichia coli
as #ly %trogen s&rce "r many genera!#s
15N heavy
15NH4CL 14NH4Cl
\ Mahboob÷

Meselson & Stahl's Experiment

similar experiments (radioactive thymidine)
Vicia faba (faba beans)
Taylor & colleagues (1958)
DNA in chromosomes also replicate semiconservatively
Proved

DNA-dependent DNA polymerase
The Machinery & the Enzymes
use DNA template
2000 bp
per sec
4.6× 10 bp
E. coli
fast &accurate
E. coli replication
18 min
Any mistake (mutations)
DNA
replication
DNA
At origin of
replication
¥hf↓µ→

Deoxyribonucleoside triphosphates
( DNTP)
polymerisation reaction
energysubstrates
For
Gives
In eukaryotes
DNA replication cell division cycle
coordinated
If
failure
polyploidy
S-phase
A

Transcription
Replication
DNA
"
DNA
"
DNA
"

Transcription
Single strand
RNA
D&ble strands
Copied
Copied
codes for 2
diff proteins
dsRNA
Can’t translate
Why not double strand ?
ATGC AUGC
v

Transcription Unit in DNA
1) Promoter
2) Structural gene
3) Terminator
DNA-dependent RNA polymerase
DNA
!

3'-ATGCATGCATGCATGCATGCATGC-5' Template Strand
5'-TACGTACGTACGTACGTACGTACG-3' Coding Strand
3'-end (downstream)5'end (upstream)
Can you now write

sequence of RNA transcribed from above DNA?
But no coding
.

Transcription Unit and the Gene
functional unit of inheritance
Eukaryotes Prokaryotes
split
Unsplit
Segment of DNA
!

Gene
All cistron are proteins
Not all proteins are cistron
(Express RNA)

i

Types of RNA and the process of Transcription
Provide template brings aminoacids &
reads genetic code
structural & catalytic role
during translation.
1 DNA-dependent RNA polymerase
transcription
Bacteria
¥

RNA polymerases
elongation
initiation. Factor
termination Factor
associates transiently
catalysing
Only
Initiates
Terminates
uses
substrate
nucleoside triphosphatesAs
v
f)
I
>
j

many times translation
b4 mRNA fully transcribed.
begin
transcription & translationSame place
Bacteria

In eukaryotes
RNApolymerase 2
3 RNA polymerases in nucleus (+ other organelles)
clear divisi# of lab&r
RNA polymerase 1
RNApolymerase 3
Transcribes
rRNAs (28S, 18S, 5.8S)
precursor of mRNA,
(hnRNA).
tRNA, 5srRNA, & snRNAs
1st difference from prokaryotes

2nd difference from prokaryotes
primary transcripts
non-functional.
splicing
introns removed
exons joined
nucleotide (methyl guanosine
triphosphate) added 5'-end
adenylate residues
(200-300) added 3'-end
mRNA
hnRNA
capping tailing
fully processed hnNA
Called
Out of nucleus
Translation
I
↓i
-

"

§

Fiqure 6.11 Process of Transcription in Eukaryotes

Genetic Code
Replication
Transcription
nucleic acid nucleic acid
complementarity
Translation
amino acids
Not complementarity
change in
Genetic material
changes in proteins
Lead
to
DNA
RNA Proteins
genetic code required
physicists,
organic chemists,
biochemists,
geneticists.
:

George Gamow, physicist
nucleotides.
1 Nucleotide - 4 combinations
2 Nucleotides - 16 combinations
3 Nucleotides - 64 combinations (Most suited for 20 amino acids)
1 codon 3 nucleotides
organized into codons
should be 20 codons For 20 amino acids
codon is triplet.

Har Gobind Khorana
Marshall Nirenberg's
homopolymers & copolymers
cell-free protein synthesis
Severo Ochoa
enzyme(polynucleotide phosphorylase)
template free ( enzymatic RNA synthesis )

Table 6.1: The Codons for the Various Amino Acids

salient features of gene!c code
stop codons
degenerate 1 amino acids coded by many codon
no punctuations read in contiguous fashion
universal
bacteria to human UUU code for Phenylalanine
(phe).
Some exceptions
mitochondrial
some protozoans.
dual functions AUG codes for Methionine (met),
& also initiator codon.
UAA, UAG, UGA
stop terminator
codons.
do not code for any amino acids,
>
>
:
>

Mutations & Genetic Code
relationships b/w genes & DNA understood by mutation studiesPoint muta!"
Frame-shi# muta!"s
single base pair of DNA
base pairs of DNA
changes changes
Eg. sickle cell anemia
Deletions & insertionsDeletions & insertions

RAM HAS RED CAP
RAM HAS BRE DCA P
RAM HAS BIR EDC AP
RAM HAS BIG RED CAP
insert B
insert I
insert G
letter deletion
letter addtion
RAM HAS EDC AP
RAM HAS DCA P
RAM HAS CAP
Must be triplet word as codon
Delete D
Delete E
RAM HAS RED CAP
Delete R
:
:
:

tRNA- the Adapter Molecule
Mechanism read code & link to amino acids
tRNA
read code
bind to specific
amino acids
As (soluble RNA)
Later adapter molecule
Francis Crick
First
complementary
amino acid acceptor end
Actual inverted [ L ]
amino acid specific
initiator
no (stop codons)
tRNA
looks like clover-leaf
Bcz can’t read
^
>
A
V
¥

Translation
polymerisation of amino acids to polypeptide
mRNA bases
sequence
amino acids
sequence
peptide bond
polypeptide
requires energyActivation of
amino acids
aminoacylation
of tRNA
Ribosome
structural RNAs80 different
inactive proteins
> ↓ >
<
a

protein translation begins
1st site
2nd site
a$no acids binding
Pep!de %rma!"
In bacteria (23S rRNA
ribozyme)
ribosome as catalyst
Complementary
↓ ↓
T
L

start codon (AUG)
stop codon
codes for polypeptide
UTRs ( untranslated regions)
5'-end (before
start codon)
3'-end (after
stop codon)
UTR UTR
translational unit in mRNA
ADAM Go

ribosome binds mRNA
start codon (AUG)
Ppolypeptide chain elongates by
adding amino acids
stop codon
polypeptide Release
ribosome dissociates
InitiationElongation termination

Regulation of Gene Expression
metabolic,
physiological
environmental conditions
By
embryo
adult
!
organisms
genes
"
expression regulation
E. coli beta- galactosidase lactose
galactose
glucose
synthesis
If no lactoseNo need to synthesised
7

Regulation of Gene Expression in prokaryotes
Each operon
specific operator
specific repressor.

Regulation of Gene Expression in Eukaryotes

The Lac operon
Geneticist, Francois Jacob
Biochemist, Jacque Monod.
first transcriptionally
regulated system
lac operon
Examples
lac operon
trp operon
ara operon
hisoperon
val operon, etc.
common promoter & regulatory genes
polycistronic
structural gene
Bacteriaoperon
regulated
by
t

Lac operon ; off
Lac operon ; Onlactose
galactose
glucose
increases cell permeability
negative regulation
Lactose
v


.

Human Genome Project
launched 1990
mega project.
3 x 10 bp
$ 3 per bp
Total [ 9 billion US
#$
]
1 book
%
1000 letters 1000 pages ,
Cost
!

Storage
Total =3300 books
&
single human cell.
Time 13 years
9
>
>
:

data storage
retrieval,
analysis.
high speed
computational
devices
Bioinformatics
Goals of HGP
Identify all
20,000-25,000 genes
in human DNA
"

Determine sequences
of 3 billion chemical
base pairs Store information
in databases
Improve tools for data
analysis
!
Transfer technologies to
other sectors, eg.
industries
Address the ethical,
legal, social issues
(ELSI) may arise from
project.
¥ }

.
iii.
÷

by U.S. Department of Energy & National Institute of Health.
Welcome Trust (U.K.) major partner
additional contributions by
DNA variations effects
revolutionary new ways
diagnose
treat
someday prevent thousands of disorders
Human Genome Project
Japan,
France,
Germany,
China
others.
completed in 2003.
chromosome { 1 }

in May
2006
Last
>
>

health care,
agriculture,
energy production,
environmental remediation
Many non-human model organisms,
bacteria,
yeast,
Caenorhabditis elegans
Drosophila
plants (rice & Arabidopsis)
DNA sequences solving challenges in
polymorphism of restriction endonuclease recognition sites,
microsatellites
genetic & physical maps on genome
By using
v

Methodologies
Expressed Sequence Tags
(ESTs).
Sequence Annotation
Only genes
"
expressed as RNA
blind approach
sequencing whole set of genome
hosts yeast,
bacteria
vectorsBAC
YAC
Frederick Sanger.
sequenced using
automated DNA
sequencers
÷
:
.

Salient Features of Human Genome
Total 3164.7 million bp.
Avg. gene of 3000
bases
total no, of genes at 30,000-
much lower than previous of
80,000 to 1,40,000 genes.
unknown functions 50
% discovered genes.
< 2 % genome codes for
proteins
Repeated sequences
make up large portion
Almost
#
(99.9 per
cent) nucleotide bases
same in all people.
dystrophin at
2.4 million bases.
Chromosome 1 most
genes (2968),
& Y fewest (231).
Repetitive sequences 100 to
1000 times.
(no direct coding function)
1.4 million locations
('snips')
^
÷

Applications and Future Challenges
past, researchers studied one or a few genes at a time.
study all genes in genome,
how 10s of 1000s genes & proteins work together
tissue
organ
tumor,
all transcripts
F

DNA Fingerprinting
HGP
99.9%
Bulk DNA
!
Same in all
0.1% Satellite DNA
DNA fingerprinting very quick
Satellite DNA 0.1%
AT / GC
Length
Repeating unit
micro-satellites mini-satellites
On basis of
Alec Jeffreys
:
¥

Main band
Satellite DNA

hybridisation using
labelled VNTR probe
autoradiography.
digestion of DNA by restriction
endonucleases,
separation of DNA fragments by
electrophoresis,transferring (blotting) to
synthetic membranes,
(nitrocellulose or nylon)
The technique involved Southern blot hybridisation using radiolabelled VNTR as a
probe
L

usatellite DNA shows very high degree of polymorphism
inheritable mutation in population at high frequency
DNA polymorphism
It differs from individual to individual in population except monozygotic
(identical) twins.
useful tool in forensic applications.
paternity testing
Crime scene etc
from every tissue
blood, hair-follicle,
skin, bone,
saliva, sperm etc
DNA individual show same degree of polymorphism
genetic mapping of human genome
,
)→

Figure 6.16 Schematic representation of DNA fingerprinting: Few representative chromosomes have been shown to contain
different copy number of VNTR. For the sake of understanding different colour schemes have been used to trace the origin of
each band in the gel. The two alleles (paternal and maternal) of a chromosome also contain different copy numbers of VNTR.
It is clear that the banding pattern of DNA from crime scene matches with individual B, and not with A

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