Embryology of Pharyngeal arches, Pouches,
Clefts: Correlation with common
developmental anomalies in ENT-Head & Neck
Dr. Kripa Dongol
M.S. (ORL-HNS) , 3
rd
Year Resident
GMSM Academy of ENT and HN Studies
TUTH, IOM
ROADMAP
•Development of pharyngeal arches, pouches & clefts
•Derivatives of pharyngeal arches, pouches & clefts
•Anomalies of pharyngeal arches
•Anomalies of pharyngeal clefts
•Anomalies of pharyngeal pouches
Pharyngeal Arches
•Typical feature in head and neck
•Develop -early 4
th
wk
•Neural crest cells migrate into the head and neck region
•Neural crest cell –skeletal components
Pharyngeal Arches
•1
st
pair arches -surface elevations lateral to pharynx
•Other arches -rounded ridges on each side of the future
head and neck regions
Pharyngeal Arches
•Morphologically, they resemble gills in fish
•True gills (branchia) not formed so the term pharyngeal
arches is used in humans.
•Branchial -Greek word branchia or gill
•Formation of the face, ear and neck
Pharyngeal Arches
•End of the 4
th
wk -four pairs of pharyngeal arches visible
externally
•Arches separated from each other by fissures -pharyngeal
grooves
•Numbered in craniocaudal sequence
Pharyngeal Arches
Ridges between arches = Clefts and Pouches
•Clefts = outside (ectoderm)
•Pouches = inside (endoderm)
Pharyngeal Arches
•1
st
(mandibular arch) -maxillary and mandibular prominences
•1
st
pair -major role in facial development
•Maxillary process -premaxilla, maxilla, zygomatic bone, and
part of the temporal bone through membranous ossification
•2
nd
arch (hyoid arch) -hyoid bone
Fate of Pharyngeal Arches
•5
th
wk -2
nd
pharyngeal arch enlarges and overgrows the 3
rd
&
4
th
arches, forms cervical sinus
•End of 7
th
wk -second to fourth pharyngeal grooves and the
cervical sinus have disappeared
Pharyngeal Arch Components
•Each arch contains
–Cartilage
–Cranial nerve
–Artery
–Muscle component
•All neural crest origin
•6 arches, only 5 form
structures in humans
–1, 2, 3, 4, and 6
–5
th
fails to develop
Arch and nerve arrangement
Arch Post-trematicnervePre-trematicnerve
1
st
Mandibularnerve (V)Chordatympani
branch of VII
2
nd
Facial nerve(VII) Tympanic branch of IX
3
rd
Glossopharyngeal(IX) -
4
th
&6
th
Superior and
Recurrent laryngeal
nerve
-
Fig. Nerve supply of each branchial arch
1
st
Arch “Mandibular Arch”
•Skeletal components
–Meckel’s cartilage
•Framework for mandible
–Malleus head and neck
–Incus body and short
process
•Muscles
–Muscles of mastication
–Anterior digastric
–Mylohyoid
–Tensor tympani
–Tensor veli palatini
•Nerve
–CN V (Trigeminal)
•Artery
–Maxillary; external carotid
2
nd
Arch “Hyoid Arch”
•Skeletal components
–Reichert’s cartilage
•Stapes
•Malleus manubrium
•Incus long process
•Styloid process
•Hyoid bone (lesser horn and
upper body)
•Muscles
–Facial expression, buccinator,
platysma, stapedius, stylohyoid,
posterior digastric
•Nerve
–CN VII (Facial)
•Artery
–Stapedial
3
rd
Arch
•Skeletal components
–Hyoid (greater horn and lower body)
•Muscles
–Stylopharyngeus
•Nerve
–CN IX (Glossopharyngeal)
•Artery
–Common/Internal carotid
Migration of parathyroids & thymus
•Thymus -migrates in a caudal and a medial direction, pulling
the inferior parathyroid with it
•Increased proportion of anomalies of position of the inferior
parathyroid gland.
•Migration is complete at the end of the 7
th
week.
Migration of parathyroids & thymus
•Superior parathyroid gland –usually above the inferior
thyroid artery and behind the recurrent laryngeal nerve
•Inferior gland -usually below the inferior thyroid artery
and in front of recurrent laryngeal nerve.
Pharyngeal Clefts
•Dorsal portion of 1
st
cleft –EAM (separated from the first
pouch by the tympanic membrane)
•3
rd
month –meatal plug, 7
th
month –dissolve –if persist :
EAC atresia
•Second arch overgrows the second, third and fourth clefts,
forming the cervical sinus which then resorbs
Development of external ear
•6 mesenchymal proliferations at the dorsal ends of the 1
st
and 2
nd
pharyngeal arches, surrounding the first
pharyngeal cleft
•These swellings (auricular hillocks), three on each
side of the external meatus, later fuse and form the
definitive auricle
Development of external ear
•Hillock 1-anterior portion of the ear lobe, hillock 2 -tragus
and hillock 3 -ascending helix.
•Of the second arch hillocks, 4 and 5 produce the anti-helix
and the helix, with 6 -posterior lobule.
•Incomplete fusion of the hillocks -clefts and hypergenesis -
tubercles, tags and polyotia
Anotia Microtia
Preauricular tags Polyotia Abnormal folds
Bat ear Lop ear Macrotia
Development of tongue
•Thyroid enlage-floor of the pharynx and develops caudally.
•It enlarges and becomes bilobedat end of 7
th
week.
•The tract usually atrophies, caudal end remains as a pyramidal
lobe.
•Failure of the tract to involute-thyroglossalcyst
•The hyoid bone, developing later, may entrap a portion of the
thyroid duct or draw it caudally, leaving the duct dorsal to the
bone
Branchial anomalies
•Result from improper development of the branchial
apparatus (Cyst, sinus or fistula)
•Cyst–Part of branchial groove or pouch become separated
from the surface and fails to resorb
•Sinus-Branchial groove or pouch fails to resorb & remains
open onto its epithelial surface
•Fistula–Passes from skin externally to pharynx or larynx
internally
Branchial anomalies
•A persistent cleft -external sinus, a blind ending opening onto
the skin.
•A persistent pouch will cause an internal sinus
•Persistence of both cleft and pouch will cause a fistula with an
internal and external opening
1
st
Arch Anomalies
•Involves malformations of eyes, ears, palate and mandible
•3 main manifestations of “First Arch Syndrome”
–TreacherCollins Syndrome
–Pierre Robin Syndrome
–GoldenharSyndrome
Treacher Collins Syndrome
•Mandibulofacial dysostosis
•Inherited AD
•Features
–Midface, zygomatic and mandibular hypoplasia
–Ear anomalies: microtia, anotia, stenotic or atresia of EAC,
malformation of malleus and incus (CHL)
–Eye anomalies: coloboma of lower lids, down-slanting
palpebral fissures
–Cleft palate (35%)
–Normal intelligence
Pierre Robin Syndrome
•Sequence of :
–Micrognathia(small mandible)
–Glossoptosis(posterior displacement/retraction of tongue)
Upper airway obstruction
–Cleft palate (U-shaped)
–Primary defect -poor growth of the mandible -posteriorly
placed tongue that fails to drop from between the palatal
shelves, preventing their fusion
Pierre Robin Syndrome
Features
•Cleft palateGlossoptosis Micrognathia
Pierre Robin Syndrome
Otolaryngological Considerations
•Airway compromise
–Upper airway obstruction
–Feeding, aspiration
•Hearing loss
–Otitismedia most common
(60%)
Associated syndromes
Stickler (18-25%)
Velocardiofacial(7-15%)
TreacherCollins (5%)
Hemifacialmicrosomia(3%)
Goldenhar Syndrome
Oculoauriculovertebral Dysplasia
•No single genetic locus
•Disturbed neural crest cells at 30-45 days gestation
•First and second branchial arch
•Hemifacial microsomiawhen no internal organ
or vertebral disruption
Goldenhar Syndrome
Otolaryngological Considerations
•Hearing loss
–More conductive than sensorineural
–Ossicularabnormalities
–Microtia
•Aberrant facial nerve course
•Surgical craniofacial reconstruction
2
nd
Arch Anomalies
•Malformed auricle
–Microtia
•Ossicularmalformation
–Stapes
–CHL
•Muscular asymmetry of face
•Hyoid malformation
–lesser horn and upper body
3
rd
Arch Anomalies
•Hyoid anomalies
–Lower body
–Greater horn
•Aneurysm of carotid artery
4
th
Arch Anomalies
•Laryngeal stenosis
•Laryngoptosis(low position of larynx)
•Chondromalacia
•Double aortic arch
•Pulmonary artery sling
–Left pulmonary artery originates from right pulmonary
artery
–Slings around right main-stem bronchus
First Branchial Cleft Anomalies
•Preauricular sinuses, cysts , Collaural fistula, EAC atresia
or stenosis
First Branchial Cleft Anomalies
•Periauricular sinuses and cysts
-Usually preauricular sinus with opening just infront of
ascending limb of helix
-Asymptomatic, infection
-Excision of cyst / sinus with tract (caution –facial nerve)
Collaural fistula
•< 5 % of branchial cleft anomalies
•Failure of resorption of ventral part of 1
st
branchial groove
•Fistula runs from EAC or tragal notch to neck between
angle of mandible and sternocleidomastoid muscle
•In some cases, a skin-covered band runs from the floor of
the meatus to the umbo
•Track –parotid; medial/lateral or through facial nerve
1
st
Branchial Cleft Cyst
•Work Classification
–Type I
•Preauricularmass or sinus
•Ectoderm
•Sinus tract is anterior and medial to the EAC
–Preauricularregion Lateral to CN VII Parallels EAC
Ends in EAC or middle ear
–Type II
•More common than Type I
•Ectoderm & Mesoderm
•Presents at the angle of mandible or submandibular region
–Angle of mandible Lateral or medial to CN VII Ends
in concha or bony-cartilaginous junction of EAC.
Collaural fistula
Presentation
•Discharge of epithelial or
sebaceous debris from opening
/ infection
Investigation
•Radioopaque sinogram using
water-soluble contrast will
demonstrate the extent of the
track
•MRI
Surgical excision -superficial
parotidectomy
Second Branchial Cleft Cysts
•Most Common (90%) branchial anomaly
•Failure of the cervical sinus to close may potentially
communicate with different branchial pouch
•Branchiooto-renal syndrome
•Congenital opening on the lower neck, anterior to
sternomastoid
Second Branchial Cleft Cysts
•Upper 2/3 & lower 1/3
rd
junction of SCM, deep to platysma,
lateral to IX, X, XII, between the internal and external
carotid and terminate in the tonsillar fossa
•Discharge / Infection
•Contrast sinogram to delineate track
•Surgical excision –step ladder incision
Third Branchial Cleft Cysts
•Rare (<2%)
•Similar external presentation to 2
nd
BCC
•Internal opening is at the pyriform sinus, then courses
cephalad to the superior laryngeal nerve through the
thyrohyoid membrane, medial to IX, lateral to X, XII,
posterior to internal carotid
•Appearance -acute suppurative thyroiditis
•Left side
•Diagnostic delay
•Treatment -Endoscopy of the piriform fossa and
complete excision of the track
4
th
Branchial Cleft Cyst
•Very rare
–~ 200 cases reported in the literature
•Also associated with recurrent thyroid abscesses
•Theoretical path of tract:
–Low in neck (anterior to SCM) , Deep to common carotid
Loops around aortic arch on the left (subclavian on
the right) Deepto superior laryngeal nerve
Superficial to recurrent laryngeal nerve Opens into
pyriform sinus
•Removal of a fourth branchial arch fistula -include excision
of the thyroid tissue to remove the whole tract
Fig. Fourth branchial cleft cyst
Work-up
•Ultrasound
•Round mass with uniform low echogenicity and lack of internal
septations
•Advantages: No radiation, no sedation for children, low cost
•CT
•Homogeneous lesion with low attenuation centrally and a
smooth enhancing rim
•Often part of the work-up
•More radiation, higher cost, may require sedation (children)
Work-up
•MRI
–Hypointense on T1 and hyperintense on T2
–Advantages: No radiation
–Disadvantages: Sedation for children, very expensive
•Fluroscopic fistulography or CT fistulography
–Inject radiopaque dye into the fistula or sinus to delineate course
•Barium swallow esophagography
–Help locate fistula tract in type 3 and 4 anomalies
•FNA
Treatment –Infected Cyst
•Antibiotics
–Should cover respiratory flora and Staph aureus (broad
spectrum)
–Cover 2-4 weeks
•Abscess
–Consider needle aspiration to drain
•May work without causing as much scaring as I&D
–I&D if needle aspiration doesn’t work
•Once infection cleared, operate
Treatment -Surgical
•Complete surgical excision of tract and cyst
•1
st
cysts
–Must identify facial nerve as tract is usually
associated with it
–If possible, wait till 2 years of age
•Mastoid tip defined
•Facial nerve larger and deeper
•Controversy: waiting can lead to more infections more
scar more difficult surgery
–Lacrimal probes can help locate tract
Second Branchial Cleft Anomaly
Treatment
Surgery
Complete surgical excision of cyst and tract
Elliptical cervical incision
»Encompassing external sinus opening
Second ‘step-laddered’ incision
»Sinus excision
»Better exposure to pharynx
MethyleneBlue
»Injected externally into the sinus tract
Lacrimalprobe
»Fistula excision
Treatment -Surgical
•3
rd
and 4
th
cysts
–Must identify the recurrent laryngeal nerve as closely
associated (will be deep to tract)
–Removal of ipsilateral thyroid lobe is advocated to
ensure complete removal of tract
–Perform DL to examine pyriform sinus
Endoscopic Cauterization of Pyriform Sinus
Opening
•Literature describes this for treatment of 4
th
sinus tracts,
but has been performed with 3
rd
cleft anomalies
•Recommendation
–Performed alone
–Performed with surgical resection of cyst and tract
Endoscopic Cauterization of Pyriform Sinus
Opening
•Verret et al.,2004
–Performed endoscopic cauterization of sinus in 10
children with 4
th
branchial cleft anomalies (no
surgical excision!)
•Dilated sinus opening with balloon catheter
cautery with electrocautery ball coagulator
•7 showed no recurrent disease after 3 years
•3 lost to F/U
1
st
Pouch Anomalies
•Atreticeustachiantube -> recurrent OM
•ET diverticuli
•Absence
–Tympanic cavity
–Mastoid antrum
2
nd
Pouch Anomalies
•Thyroglossalduct cyst
–Failure of ablation of TGD
–Most common congenital neck mass
–Anywhere from base of tongue to upper mediastinum
–Typical finding
•Cystic lesion at or just below hyoid in midline that
moves with swallowing and tongue protrusion
Thyroglossal Duct Cyst
–May contain thyroid tissue
•Potentially the only functioning thyroid
–Perform U/S or CT to look for thyroid and to assess lesion
–Treatment –surgical
–Excision : 85% recurrence vsSistrunk’s: 2-8 %
–Modified Sistrunk’soperation
–May contain cancer
•1%
•Papillary carcinoma
ThyroglossalDuct Cyst
2
nd
Pouch Anomalies
•Lingual Thyroid
–Failure of decent of thyroid -> atopic
•90% of cases at the base of tongue (lingual thyroid)
–4:1 female:male
–Usually not noted until teenage or young adult
–Asymptomatic (most cases); dysphagia, airway
compromise
–Reddish mass (well vascularized) at base of tongue
Lingual Thyroid
–Hypothyroidism –70% of cases
–2/3 cases –only functioning thyroid tissue
•Thyroid function study prior to treatment
–Treatment
•Asymptomatic –Monitor
•Symptomatic
–Excise +/-transplant tissue into muscles of neck
–Radioiodine therapy (destroys all thyroid tissue)
•Usually require lifelong thyroid replacement
Lingual Thyroid
Lateral cervical (or branchial) cysts
•Developmental failure of branchialapparatus
•Peak age incidence –3
rd
decade
•Cyst lining –Stratified squamousepithelium, 10% respiratory
epithelium
•80%-lymphoid tissue in wall, straw colouredfluid with
cholesterol crystals
Lateral cervical (or branchial) cysts
•Theories of aetiology –
a)Branchial apparatus theory –Remains of branchial
pouches or clefts. Later age at presentation.
b)Cervical sinus theory
c)Thymopharyngeal duct theory –Remnants of connection
between thymus and 3
rd
branchial pouch. But no persistent
thymic duct found.
d)Inclusion theory –Epithelial inclusions within lymph node.
Lymphatic tissue in wall of cyst, Reported –Parotid,
pharynx. Constant position of cyst in neck (against)
Lateral cervical (or branchial) cysts
Cl/ f :
•Anterior to the upper third of
sternocleidomastoidin young
adults.
•Persistent or Intermittent swelling
•Cystic or firm
•40% cases –URTI preceed
•Infection
Investigations
-USG neck, FNAC, CT scan neck