WhatCheck | BioCode Ltd

WhatCheck

1. WhatCheck

2. Content Introduction Objectives Input & Output Methodology Results Analysis Conclusion

3. WhatCheck (Protein Model Evaluation Tool) is an efficient tool built upon C++ programming which evaluate the predicted models of proteins by checking stereochemical parameters of amino acid residues. Introduction

4. “ WhatCheck is derived from a subset of protein verification tools from the WHATIF program, this does extensive checking of many stereochemical parameters of the residues in the model.”

5. Objectives Available on WhatCheck is a web based tool that can accessed through any web browser. Research Outcome Provides extensive checking of many stereochemical parameters of the residues in the model. Analyzes Analyzes the predicted models of proteins by checking stereochemical parameters of amino acid residues.

6. Input The server requires to upload the file containing the target protein structure in PDB format. The server results in plots providing description of amino acids of protein structure. Output Input & Output

7. Residues Error Description of the errors present in the subset of amino acid residues Predicted models Better predicted models shows more green coloured residues. Residues Provides the different sets of amino acids with different colors Residues Quality Quality of these residues sets is based on their colors. Quality Qualities of protein models based on their stereochemical properties Research Outcome Evaluation Protein model evaluation of predicted protein models.

8. This is how WhatCheck provides results for protein model either predicted or experimentally determined. It generate different residues sets. The quality of these residues sets is associated with their colors.

9. 1st Colors Implication 2nd Green Highly Reliable Validated 3rd Yellow Not much Reliable/Mildly Issued 4th Red Not Validated Results Analysis Table shows the description of amino acid residues with different colors:

10. WhatCheck (Protein Model Evaluation Tool) is efficiently visualize and manipulate the predicted protein by evaluating sets amino acid residues within the query protein structure. Conclusion

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